PHATRDRAFT_49641 (LabA_like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49641 chr_23 (LabA_like) 282156 284495 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0396

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0072
 0.33

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LabA_like LabA_like proteins; A well conserved group of domains found in all three kingdoms of life, with no... cl10034 78.6448 8.70E-17 224 - 409 specific 199895
LabA_like/DUF88 superfamily LabA_like proteins; The LabA-like superfamily is composed of a well conserved group of bacterial... - 78.6448 8.70E-17 224 - 409 superfamily 263953
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 51.9992 1.55E-08 610 - 641 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 51.9992 1.55E-08 610 - 641 superfamily 261387
COG1432 Uncharacterized conserved protein [Function unknown] - 46.6349 4.13E-06 323 - 407 multi-dom 224349

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
4424 Not available 237096 149010 103782 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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