PHATRDRAFT_23444 gtp-binding protein typa (TypA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_23444 chr_24 gtp-binding protein typa (TypA) 107778 110020 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0134

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0034
 0.35

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TypA_BipA Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; BipA is a... cl17170 353.437 5.30E-118 65 - 261 specific 206678
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 353.437 5.30E-118 65 - 261 superfamily 266525
BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the... cl02785 111.057 5.14E-29 471 - 549 specific 239681
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 111.057 5.14E-29 471 - 549 superfamily 261447
BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation... cl02787 106.414 2.94E-27 271 - 354 specific 239662
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 106.414 2.94E-27 271 - 354 superfamily 261449
TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] - 831.113 0 65 - 663 multi-dom 224138

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
36576 Not available 245528 213345 453823 Cre07.g335200.t1.1 AT5G13650.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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