PHATRDRAFT_49741 trna rrna methyltransferase (SpoU)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49741 chr_24 trna rrna methyltransferase (SpoU) 129359 130390 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0493

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0009
 0.43

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. cl17307 128.781 4.84E-36 178 - 330 specific 249983
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 128.781 4.84E-36 178 - 330 superfamily 266618
SpoU_sub_bind RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O... cl06870 41.7528 2.19E-05 88 - 163 specific 214943
SpoU_sub_bind superfamily RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O... - 41.7528 2.19E-05 88 - 163 superfamily 263082
SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] - 168.619 9.86E-50 59 - 335 multi-dom 223640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
39062 Not available 140283 301841 62124 Cre17.g744947.t1.1 AT4G38020.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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