PHATRDRAFT_1971 (Pat_SDP1-like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_1971 chr_24 (Pat_SDP1-like) 282391 284055 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0009
 0.43

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pat_SDP1-like Sugar-Dependent 1 like lipase; Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase... cl11396 494.278 1.58E-173 68 - 490 specific 132869
Patatin_and_cPLA2 superfamily Patatins and Phospholipases; Patatin-like phospholipase. This family consists of various patatin... - 494.278 1.58E-173 68 - 490 superfamily 264349
RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] - 102.12 2.05E-24 135 - 354 multi-dom 224666

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
41637 Not available 178296 327636 450947 Cre17.g699100.t1.1 AT3G57140.2 299378

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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