PHATRDRAFT_40606 (Rav1p_C superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_40606 chr_24 (Rav1p_C superfamily) 409677 419182 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0040

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0090
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SH2 Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... cl15255 45.9095 1.38E-05 2360 - 2394 specific 198173
SH2 superfamily Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... - 45.9095 1.38E-05 2360 - 2394 superfamily 265655
Rav1p_C superfamily RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621... - 102.082 6.84E-22 1508 - 1668 superfamily 256917
PDZ superfamily PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif).... - 39.0871 0.0024099 867 - 945 superfamily 260201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 205312 Not available 461741 Cre04.g223000.t1.1 AT2G46560.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments