PHATRDRAFT_50048 lsm1u6 small nuclear rna associated (LSm1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_50048 chr_26 lsm1u6 small nuclear rna associated (LSm1) 246123 246996 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0038

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm1 Like-Sm protein 1; The eukaryotic LSm proteins (LSm1-7) assemble into a hetero-heptameric ring... cl00259 107.602 5.72E-30 90 - 170 specific 212475
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 107.602 5.72E-30 90 - 170 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
19826 Not available 214447 171797 443046 Cre12.g538750.t1.2 AT1G19120.1 316685

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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