PHATRDRAFT_54151 long-chain fatty-acid-ligase (FAA1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_54151	chr_3	long-chain fatty-acid-ligase (FAA1)	78733	81166	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0345

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0003	0.71	94000 140000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VL_LC_FACS_like		Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases...	cl17068	431.954	3.72E-144	113 - 675	specific	213275
AFD_class_I superfamily		Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the...	-	431.954	3.72E-144	113 - 675	superfamily	266508
FAA1		Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	-	456.779	1.26E-151	67 - 693	multi-dom	223953

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
262242		Not available	215629	264815	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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