PHATRDRAFT_18475 translation elongation factor 1 alpha (PTZ00141)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_18475 chr_3 translation elongation factor 1 alpha (PTZ00141) 223823 225428 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0147

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0159
 0.19

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF1_alpha Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent... cl17170 452.716 1.15E-159 9 - 227 specific 206670
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 452.716 1.15E-159 9 - 227 superfamily 266525
EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent... cl02786 204.35 2.24E-64 324 - 426 specific 239676
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 204.35 2.24E-64 324 - 426 superfamily 261448
EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is... cl02787 168.114 1.17E-50 230 - 318 specific 239664
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 168.114 1.17E-50 230 - 318 superfamily 261449
PTZ00141 elongation factor 1- alpha; Provisional - 908.356 0 1 - 428 multi-dom 185474

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 354065

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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