PHATRDRAFT_44023 (DENN)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_44023 chr_3 (DENN) 721440 725456 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0131

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0111
 0.46

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DENN DENN (AEX-3) domain; DENN (after differentially expressed in neoplastic vs normal cells) is a... cl11519 174.674 2.67E-49 165 - 351 specific 251116
DENN superfamily DENN (AEX-3) domain; DENN (after differentially expressed in neoplastic vs normal cells) is a... - 174.674 2.67E-49 165 - 351 superfamily 264408
dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins; The dDENN... cl04084 64.2334 2.75E-12 478 - 548 specific 129037
dDENN superfamily dDENN domain; This region is always found associated with pfam02141. It is predicted to form a... - 64.2334 2.75E-12 478 - 548 superfamily 262010
uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins; The uDENN... cl04085 63.8929 6.58E-12 29 - 145 specific 214824
uDENN superfamily uDENN domain; This region is always found associated with pfam02141. It is predicted to form an all... - 63.8929 6.58E-12 29 - 145 superfamily 262011
PPR pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or... cl03252 38.9808 0.000813094 1004 - 1036 specific 213555
PPR_2 superfamily PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found... - 38.9808 0.000813094 1004 - 1036 superfamily 261658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
24097 Not available 250530 249345 228248 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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