PHATRDRAFT_10284 ribosomal large subunit pseudouridine synthase a (RluA)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_10284	chr_3	ribosomal large subunit pseudouridine synthase a (RluA)	876952	882368	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0145

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0249	0.32	29000 800000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth_RluCD_like		Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and...	cl00130	148.64	4.22E-45	10 - 175	specific	211346
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	148.64	4.22E-45	10 - 175	superfamily	260207
RluA		Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	-	173.266	1.88E-53	1 - 175	multi-dom	223638

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
269765		Not available	197218	191875	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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