PHATRDRAFT_25856 endopeptidase clp atp-binding chain b (chaperone_ClpB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_25856 chr_3 endopeptidase clp atp-binding chain b (chaperone_ClpB) 1131958 1135230 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0296

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0017
 0.46

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 79.4975 5.91E-17 684 - 842 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 79.4975 5.91E-17 684 - 842 superfamily 267297
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 79.4975 5.91E-17 684 - 842 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 79.4975 5.91E-17 684 - 842 superfamily 267297
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... cl11083 110.563 1.99E-28 882 - 962 specific 255983
ClpB_D2-small superfamily C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... - 110.563 1.99E-28 882 - 962 superfamily 264218
Clp_N superfamily Clp amino terminal domain; This short domain is found in one or two copies at the amino terminus of... - 42.9016 2.73E-05 194 - 241 superfamily 251573
Clp_N superfamily Clp amino terminal domain; This short domain is found in one or two copies at the amino terminus of... - 42.9016 2.73E-05 194 - 241 superfamily 251573
chaperone_ClpB ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent... - 1237.53 0 141 - 969 multi-dom 234173

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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