PHATRDRAFT_33660 40s ribosomal protein (PTZ00084)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_33660 chr_4 40s ribosomal protein (PTZ00084) 35370 38672 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0150

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0210
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is... cl00098 148.91 1.95E-45 11 - 91 specific 239096
KH-II superfamily KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found... - 148.91 1.95E-45 11 - 91 superfamily 260189
Ribosomal_S3_C superfamily Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the... - 77.5474 1.61E-18 100 - 184 superfamily 249666
Ribosomal_S3_C superfamily Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the... - 77.5474 1.61E-18 100 - 184 superfamily 249666
PTZ00084 40S ribosomal protein S3; Provisional - 379.393 1.08E-133 1 - 213 multi-dom 240260

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
28049 Not available 272269 200128 415280 Cre02.g102250.t1.2 AT3G53870.1 287105

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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