PHATRDRAFT_11441 rna polymerase ii second largest subunit (PRK08565)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_11441	chr_5	rna polymerase ii second largest subunit (PRK08565)	83638	87443	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0150

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0097	0.27	190 29000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNA_pol_B_RPB2 superfamily		RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA....	-	1113.03	0	44 - 1201	superfamily	238353
RNA_pol_B_RPB2 superfamily		RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA....	-	1113.03	0	44 - 1201	superfamily	238353
RNA_pol_Rpb2_4 superfamily		RNA polymerase Rpb2, domain 4; RNA polymerases catalyse the DNA dependent polymerization of RNA....	-	107.379	2.17E-27	593 - 654	superfamily	113341
RNA_pol_Rpb2_4 superfamily		RNA polymerase Rpb2, domain 4; RNA polymerases catalyse the DNA dependent polymerization of RNA....	-	107.379	2.17E-27	593 - 654	superfamily	113341
PRK08565		DNA-directed RNA polymerase subunit B; Provisional	-	1191.69	0	32 - 1200	multi-dom	236291

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
40925		Not available	273391	198725	465037	Not available	AT3G18090.1	262616

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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