PHATRDRAFT_11145 splicing factor u2af largepartial (RRM2_U2AF65)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_11145 chr_5 splicing factor u2af largepartial (RRM2_U2AF65) 478153 479421 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0203

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0187
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM2_U2AF65 RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa... cl17169 132.354 2.41E-38 124 - 200 specific 240677
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 96.471 5.96E-25 230 - 312 superfamily 266524
RRM1_U2AF65 RNA recognition motif 1 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa... cl17169 126.887 3.10E-36 7 - 88 specific 240676
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 96.471 5.96E-25 230 - 312 superfamily 266524
RRM3_U2AF65 RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa... cl17169 96.471 5.96E-25 230 - 312 specific 240678
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 96.471 5.96E-25 230 - 312 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263000 Not available 211877 195753 449346 Cre09.g391949.t1.1 AT1G60900.1 309221

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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