PHATRDRAFT_11235 pentapeptide repeatPhaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_11235	chr_5	pentapeptide repeat	630730	631059	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0339

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0080	0.29	0.000000000039 26000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pentapeptide superfamily		Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The...	-	40.0595	2.90E-06	10 - 49	superfamily	109845
Pentapeptide superfamily		Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The...	-	40.0595	2.90E-06	10 - 49	superfamily	109845
Pentapeptide_4		Pentapeptide repeats (9 copies); Pentapeptide repeats (9 copies).	-	36.9006	6.57E-05	3 - 77	multi-dom	257914

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
25140		Not available	144511	210246	425734	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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