PHATRDRAFT_19805 hypersensitive-induced response protein (SPFH_like_u4)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_19805	chr_6	hypersensitive-induced response protein (SPFH_like_u4)	860520	861528	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0315

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0234	0.45	69 19000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SPFH_like_u4		Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model...	cl19107	405.045	1.03E-142	7 - 274	specific	259805
SPFH_like superfamily		core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model...	-	405.045	1.03E-142	7 - 274	superfamily	267460
PHB		prohibitin homologues; prohibitin homologues	-	75.7748	3.89E-17	4 - 162	multi-dom	214581

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
268160		Not available	270904	252777	363433	Not available	AT3G01290.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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