PHATRDRAFT_54420 gtp binding protein (Sar1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_54420	chr_7	gtp binding protein (Sar1)	379841	380576	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0095	0.39	0.00055 2800

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sar1		Sar1 is an essential component of COPII vesicle coats; Sar1 is an essential component of COPII...	cl17170	324.616	1.12E-113	2 - 191	specific	206645
Ras_like_GTPase superfamily		Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase...	-	324.616	1.12E-113	2 - 191	superfamily	266525
COG1100		GTPase SAR1 and related small G proteins [General function prediction only]	-	101.576	1.80E-26	16 - 189	multi-dom	224025

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
39497		Not available	210389	189802	443224	Cre11.g468300.t1.2	AT4G02080.1	284940

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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