PHATRDRAFT_27166 spermidine putrescine abc transporter atp-binding subunit (PGDH_like_3)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_27166 chr_7 spermidine putrescine abc transporter atp-binding subunit (PGDH_like_3) 639495 640910 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0143

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0152
 0.19

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PGDH_like_3 Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate... cl17240 339.537 1.61E-113 52 - 363 specific 240651
FDH_GDH_like superfamily Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related... - 339.537 1.61E-113 52 - 363 superfamily 266580
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 76.3924 2.56E-17 378 - 453 superfamily 263730
SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] - 172.883 2.43E-49 81 - 365 multi-dom 223189

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 420632 Cre07.g344400.t1.2 Not available 345297

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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