PHATRDRAFT_35766 elongation factor 2 (PLN00116)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_35766 chr_8 elongation factor 2 (PLN00116) 702022 704589 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0153

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0057
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF2 Elongation Factor 2 (EF2) in archaea and eukarya; Translocation requires hydrolysis of a molecule... cl17170 359.238 3.38E-118 12 - 217 specific 206672
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 359.238 3.38E-118 12 - 217 superfamily 266525
aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an... cl02789 279.07 2.51E-88 544 - 716 specific 238839
EFG_like_IV superfamily Elongation Factor G-like domain IV. This family includes the translational elongation factor termed... - 279.07 2.51E-88 544 - 716 superfamily 243187
eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found... cl02787 151.176 8.24E-43 364 - 457 specific 239671
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 151.176 8.24E-43 364 - 457 superfamily 261449
eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (... cl02785 148.843 3.14E-42 712 - 790 specific 239763
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 148.843 3.14E-42 712 - 790 superfamily 261447
EFG_II superfamily Elongation Factor G, domain II; This domain is found in Elongation Factor G. It shares a similar... - 74.7726 3.49E-16 473 - 543 superfamily 258632
PLN00116 translation elongation factor EF-2 subunit; Provisional - 1645.99 0 1 - 828 multi-dom 177730

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269148 Not available 260750 42700 420527 Cre12.g516200.t1.2 AT3G12915.2 503308

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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