PHATRDRAFT_20335 dhx33 protein (HA2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_20335 chr_8 dhx33 protein (HA2) 772854 775037 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0141

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0069
 0.42

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 85.4668 2.78E-19 45 - 185 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 85.4668 2.78E-19 45 - 185 superfamily 266587
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 101.525 1.43E-25 421 - 513 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 101.525 1.43E-25 421 - 513 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 80.805 4.15E-18 553 - 660 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 80.805 4.15E-18 553 - 660 superfamily 254381
HELICc helicase superfamily c-terminal domain; helicase superfamily c-terminal domain. cl17351 45.2805 3.66E-06 268 - 325 specific 197757
Helicase_C superfamily Helicase conserved C-terminal domain; The Prosite family is restricted to DEAD/H helicases, whereas... - 45.2805 3.66E-06 268 - 325 superfamily 266641
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 36.4469 0.00408204 215 - 368 superfamily 238034
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 87.1622 1.62E-19 28 - 212 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
34782 Not available 168613 186439 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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