PHATRDRAFT_12921 alm beta-like (S1_like superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_12921	chr_9	alm beta-like (S1_like superfamily)	76732	77454	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0191

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0248	0.29	190 490

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	97.7151	6.20E-26	38 - 119	superfamily	263921
RRP4		RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation,...	-	90.4791	6.40E-22	1 - 203	multi-dom	224022

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
4340		Not available	238904	283483	436227	Cre07.g319900.t1.1	AT2G25355.2	302978

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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