PHATRDRAFT_46151 nucleic acid bindingrelated (DUF2431 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_46151 chr_9 nucleic acid bindingrelated (DUF2431 superfamily) 425447 427558 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0392

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0110
 0.50

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... cl09940 39.5402 0.000294206 401 - 447 specific 238095
S4 superfamily S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... - 39.5402 0.000294206 401 - 447 superfamily 263930
DUF2431 superfamily Domain of unknown function (DUF2431); This is the N-terminal domain of a family of proteins found... - 100.352 3.17E-24 24 - 180 superfamily 255931
rluA_subfam pseudouridine synthase, RluA family; In E. coli, RluD (SfhB) modifies uridine to pseudouridine at... - 46.5474 1.13E-05 382 - 580 multi-dom 161659

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22316 Not available 258549 36760 252153 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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