PHATRDRAFT_36118 (Alginate_lyase)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_36118 chr_9 (Alginate_lyase) 600427 603069 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0419

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0010
 0.55

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Alginate_lyase Alginate lyase; This family contains several bacterial alginate lyase proteins. Alginate is a... cl00179 129.863 3.81E-33 512 - 806 specific 253191
AlgLyase superfamily Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-... - 129.863 3.81E-33 512 - 806 superfamily 260237
DUF507 superfamily Protein of unknown function (DUF507); Bacterial protein of unknown function. - 37.2305 0.00762536 174 - 263 superfamily 242308

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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