PHATRDRAFT_12655 protein kinase a regulatory subunit (CAP_ED)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_12655 chr_9 protein kinase a regulatory subunit (CAP_ED) 812764 813546 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0328

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0055
 0.36

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 66.9658 2.06E-14 153 - 254 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 66.9658 2.06E-14 153 - 254 superfamily 260155
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 66.9658 2.06E-14 153 - 254 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 66.9658 2.06E-14 153 - 254 superfamily 260155
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 55.9931 6.81E-10 146 - 249 multi-dom 223736
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 55.9931 6.81E-10 146 - 249 multi-dom 223736

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
27773 Not available 208299 183742 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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