PHATRDRAFT_47783 Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47783	chr_15		18598	19255	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0328

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0006	0.56	780 24000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SAM_superfamily superfamily		SAM (Sterile alpha motif ); SAM (Sterile Alpha Motif) domain is a module consisting of...	-	43.0596	1.86E-06	9 - 61	superfamily	265771
PRK14127 superfamily		cell division protein GpsB; Provisional	-	34.9878	0.00256255	87 - 128	superfamily	267870
SAM		Sterile alpha motif; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine...	-	36.505	0.000440081	8 - 71	multi-dom	197735

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
5515		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments