10077 SKP1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10077 chr_15 SKP1 186718 187809 + SKP1

Synonyms

NCBI ID Ensembl Genomes exon ID
7441967 Thaps10077.4, Thaps10077.3, Thaps10077.1, Thaps10077.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0207

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0181
 0.40

Most Highly Correlated Transcripts

270222

0.9359

35314

GSH_Peroxidase
0.8909

261400

NA
0.8905

16295

FBPase
0.8903

35896

IF-2B superfamily
0.8837

268257

fabG
0.8828

1819

hypothetical protein
0.8822

40097

EMP24_GP25L
0.881

21271

hypothetical protein
0.8807

3341

hypothetical protein
0.8804

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 107.638 1.66E-30 96 - 167 superfamily 250639
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 107.638 1.66E-30 96 - 167 superfamily 250639
Skp1 Found in Skp1 protein family; Family of Skp1 (kinetochore protein required for cell cycle... cl17737 88.8896 4.51E-23 10 - 121 specific 214704
Skp1_POZ superfamily Skp1 family, tetramerization domain; Skp1 family, tetramerization domain. - 88.8896 4.51E-23 10 - 121 superfamily 266799
SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] - 117.738 2.37E-33 10 - 168 multi-dom 227528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 272443 248184 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Circadian rhythm - mammal map04710

GO Terms

Not available -

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