20904 WrbAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20904	chr_1	WrbA	1911300	1913528	+	WrbA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443144	Thaps20904.3, Thaps20904.1, Thaps20904.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0331

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0068	0.42	0.55 0.59

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9465	bd1877 (bd1877) NA 0.9061	bd409 (bd409) Snf7 superfamily 0.8902	21558 hypothetical protein 0.8553	25381 hypothetical protein 0.8534	7336 hypothetical protein 0.8429
7335 hypothetical protein 0.8352	24684 hypothetical protein 0.8321	bd1890 (bd1890) NA 0.8319	bd1875 (bd1875) NA 0.8289

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WrbA		Multimeric flavodoxin WrbA [General function prediction only]	cl00438	63.2891	1.42E-11	399 - 478	specific	223728
FMN_red superfamily		NADPH-dependent FMN reductase; NADPH-dependent FMN reductase.	-	63.2891	1.42E-11	399 - 478	superfamily	260423

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	289166	49408	Cre05.g237100.t1.2	Not available	285830

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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