20990 PLN03151Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20990	chr_1	PLN03151	2413812	2419873	-	PLN03151

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449056	Thaps20990.3, Thaps20990.6, Thaps20990.2, Thaps20990.4, Thaps20990.5, Thaps20990.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0332

Most Highly Correlated Transcripts

25655 hypothetical protein 0.8942	4565 hypothetical protein 0.8896	1986 MATE_like superfamily 0.8811	21220 KU superfamily 0.8761	21304 hypothetical protein 0.8755	25509 hypothetical protein 0.8751
4482 hypothetical protein 0.875	5653 hypothetical protein 0.8747	4045 PHD 0.8727	27813 Hid1 superfamily 0.8724

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Na_Ca_ex superfamily		Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane...	-	63.7752	2.09E-11	1350 - 1414	superfamily	250805
Na_Ca_ex superfamily		Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane...	-	63.7752	2.09E-11	1350 - 1414	superfamily	250805
PLN03151		cation/calcium exchanger; Provisional	-	100.992	7.59E-22	1347 - 1748	multi-dom	215604

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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