21370 ATS1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21370 chr_2 ATS1 1503459 1510876 - ATS1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0092

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0043
 0.36

Most Highly Correlated Transcripts

bd1852

(bd1852) NA
0.9634

bd765

(bd765) NA
0.9594

bd886

(bd886) NA
0.9389

6626

hypothetical protein
0.9178

10750

MDR8
0.9156

bd1670

(bd1670) SUL1
0.9083

262708

TPR
0.9027

4782

hypothetical protein
0.9026

bd1081

(bd1081) NA
0.9002

1904

hypothetical protein
0.8887

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome... - 119.943 3.26E-28 1046 - 1398 multi-dom 227511
ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome... - 119.943 3.26E-28 1046 - 1398 multi-dom 227511
ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome... - 119.943 3.26E-28 1046 - 1398 multi-dom 227511
ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome... - 119.943 3.26E-28 1046 - 1398 multi-dom 227511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0006508 GO:0008766 GO:0016881 GO:0018169 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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