21439 A_deamin superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21439 chr_2 A_deamin superfamily 1774043 1780013 + A_deamin superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0406

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0055
 0.46

Most Highly Correlated Transcripts

bd1941

(bd1941) NA
0.8832

bd1841

(bd1841) CAP10 superfamily
0.8604

bd1793

(bd1793) NA
0.8498

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8461

bd410

(bd410) HNHc
0.8428

bd1808

(bd1808) NA
0.8231

21807

hypothetical protein
0.7858

bd1786

(bd1786) GLTP superfamily
0.7839

bd1787

(bd1787) GLTP
0.7813

262151

Chitin_synth_2
0.7808

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
A_deamin superfamily Adenosine-deaminase (editase) domain; Adenosine deaminases acting on RNA (ADARs) can deaminate... - 106.294 1.98E-24 1352 - 1724 superfamily 261397

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31980 PHATRDRAFT_31980 232848 264503 Not available Not available Not available 532829

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0003723 GO:0004000 GO:0006396 GO:0004339 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004000

adenosine deaminase activity

Details: 
Catalysis of the reaction: adenosine + H2O = inosine + NH3.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0004339

glucan 1,4-alpha-glucosidase activity

Details: 
Catalysis of the hydrolysis of terminal (1->4)-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose.
GO Category: 
MF

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