2178 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2178 chr_2 WD40 superfamily 359739 365616 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442231 Thaps2178.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0329

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0265
 0.39

Most Highly Correlated Transcripts

bd824

(bd824) NA
0.8961

bd1877

(bd1877) NA
0.8835

bd616

(bd616) NA
0.881

bd1802

(bd1802) NA
0.8778

bd739

(bd739) NA
0.871

bd1891

(bd1891) COG3899
0.8578

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.8299

bd1890

(bd1890) NA
0.8263

7335

hypothetical protein
0.8211

36650

hypothetical protein
0.813

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 97.0204 1.86E-21 1108 - 1394 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 66.6507 3.37E-11 1434 - 1872 multi-dom 225201
COG2319 FOG: WD40 repeat [General function prediction only] - 66.6507 3.37E-11 1434 - 1872 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre03.g178100.t1.1 Not available 314242

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005509 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

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