2227 DUF3661Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2227	chr_2	DUF3661	488966	489835	+	DUF3661

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442253	Thaps2227.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0009

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0155	0.30	110 320

Most Highly Correlated Transcripts

22418 hypothetical protein 0.9053	9490 hypothetical protein 0.905	22673 NA 0.9011	1506 hypothetical protein 0.8994	6504 CDP-OH_P_transf superfamily 0.8954	5074 hypothetical protein 0.8948
32745 PDI_a_family 0.8944	23960 hypothetical protein 0.8919	39497 Sar1 0.8903	39278 ATP-synt_C 0.8902

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF3661 superfamily		Vaculolar membrane protein; This domain family is found in eukaryotes, and is typically between 123...	-	148.131	3.36E-44	97 - 223	superfamily	257026
DUF3661 superfamily		Vaculolar membrane protein; This domain family is found in eukaryotes, and is typically between 123...	-	148.131	3.36E-44	97 - 223	superfamily	257026

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47700	PHATRDRAFT_47700	273855	63177	Not available	Cre16.g686550.t1.1	Not available	565589

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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