22635 SIK1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22635 chr_5 SIK1 593391 602167 + SIK1

Synonyms

NCBI ID Ensembl Genomes exon ID
7451779 Thaps22635.1, Thaps22635.4, Thaps22635.3, Thaps22635.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

31516

SIK1
0.8639

22036

ElaC
0.851

268744

SUA5
0.8503

23442

hypothetical protein
0.8495

23336

SRP40_C superfamily
0.8467

25359

hypothetical protein
0.8457

21929

COG0116
0.8425

20597

hypothetical protein
0.8421

268486

Glyco_transf_22 superfamily
0.84

508

CBF5
0.8392

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nop superfamily Putative snoRNA binding domain; This family consists of various Pre RNA processing... - 234.489 2.61E-75 273 - 425 superfamily 250875
Nop superfamily Putative snoRNA binding domain; This family consists of various Pre RNA processing... - 234.489 2.61E-75 273 - 425 superfamily 250875
NOSIC NOSIC (NUC001) domain; This is the central domain in Nop56/SIK1-like proteins. cl06890 94.8848 2.53E-24 181 - 231 specific 254604
NOSIC superfamily NOSIC (NUC001) domain; This is the central domain in Nop56/SIK1-like proteins. - 94.8848 2.53E-24 181 - 231 superfamily 263088
NOP5NT superfamily NOP5NT (NUC127) domain; This N terminal domain is found in RNA-binding proteins of the NOP5 family. - 68.7403 1.10E-14 1 - 54 superfamily 254636
NOP5NT superfamily NOP5NT (NUC127) domain; This N terminal domain is found in RNA-binding proteins of the NOP5 family. - 68.7403 1.10E-14 1 - 54 superfamily 254636
SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and... - 370.191 1.18E-124 46 - 426 multi-dom 224415

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19552 PHATRDRAFT_19552 273707 197895 75659 Cre10.g441400.t1.2 AT5G27120.1 246404

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

Not available -

Add comment

Log in to post comments