22748 ANKThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22748	chr_5	ANK	1231073	1232198	-	ANK

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450080	Thaps22748.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0467

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0017	0.42

Most Highly Correlated Transcripts

23272 AP_muniscins_like_MHD 0.8541	23794 hypothetical protein 0.7413	19158 GRX_PICOT_like 0.735	25194 hypothetical protein 0.7347	2612 hypothetical protein 0.7317	bd833 (bd833) NA 0.7263
22490 Cyt_b561_FRRS1_like 0.7141	bd296 (bd296) EFh 0.7126	24134 hypothetical protein 0.7124	34280 2OG-FeII_Oxy_3 superfamily 0.7114

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	67.4086	8.25E-14	229 - 370	superfamily	238125
ANK superfamily		ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of...	-	67.4086	8.25E-14	229 - 370	superfamily	238125

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments