23010 TDP2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23010	chr_6	TDP2	450745	452623	+	TDP2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448432	Thaps23010.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0135

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0255	0.31	150 10000

Most Highly Correlated Transcripts

23573 hypothetical protein 0.909	1985 hypothetical protein 0.9084	3694 hypothetical protein 0.906	21469 hypothetical protein 0.9058	3842 hypothetical protein 0.9052	20665 hypothetical protein 0.9039
11165 hypothetical protein 0.8977	5051 hypothetical protein 0.8969	11998 hypothetical protein 0.8964	261400 NA 0.8948

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TDP2		Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related...	cl00490	201.803	2.59E-60	5 - 269	specific	197314
EEP superfamily		Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; This large superfamily includes the...	-	201.803	2.59E-60	5 - 269	superfamily	260458

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	233304	Not available	Not available	Cre12.g521600.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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