23624 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23624 chr_7 SCP superfamily 1809586 1811363 + SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447196 Thaps23624.3, Thaps23624.1, Thaps23624.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0381

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0273
 0.40

Most Highly Correlated Transcripts

23509

hypothetical protein
0.9101

10322

hypothetical protein
0.8831

23416

SCP superfamily
0.8781

25381

hypothetical protein
0.8698

21582

hypothetical protein
0.8637

21068

hypothetical protein
0.863

21795

SCP superfamily
0.8599

21798

hypothetical protein
0.8548

263313

Peptidase_M8 superfamily
0.8436

8288

hypothetical protein
0.8399

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 74.939 2.43E-16 255 - 391 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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