23857 PUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23857 chr_8 PUB 1060352 1062443 - PUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7449953 Thaps23857.3, Thaps23857.2, Thaps23857.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

35136

NA
0.9092

269655

PRK09330
0.8697

13448

Sec1
0.8491

11068

(PSA6) proteasome_alpha_type_6
0.8407

18099

(NIFU_2) Nfu_N
0.8394

40200

TRX_reduct
0.8333

4318

TIM21 superfamily
0.833

21734

DnaJ-X superfamily
0.8328

270222

0.8317

516

(RPT5) RPT1
0.8297

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PUB PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... cl15262 88.208 6.83E-21 500 - 592 specific 198416
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 88.208 6.83E-21 500 - 592 superfamily 265658
TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX... cl00388 61.4201 1.40E-11 53 - 143 specific 239245
Thioredoxin_like superfamily Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX... - 61.4201 1.40E-11 53 - 143 superfamily 260398

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13505 PHATRDRAFT_13505 268783 328778 Not available Not available AT1G04850.1 351153

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005489 GO:0006118 GO:0003676 GO:0005634 GO:0008270 GO:0003756 -

GO:0005489

NA

Details: 
NA
GO Category: 
NA

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0003756

protein disulfide isomerase activity

Details: 
Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins.
GO Category: 
MF

Add comment

Log in to post comments