2420 RpsA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2420 chr_2 RpsA 953343 954493 + RpsA

Synonyms

NCBI ID Ensembl Genomes exon ID
7450259 Thaps2420.2, Thaps2420.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0138

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0059
 0.44

Most Highly Correlated Transcripts

bd1841

(bd1841) CAP10 superfamily
0.9074

bd885

(bd885) NA
0.8822

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8718

11676

hypothetical protein
0.8634

bd884

(bd884) NA
0.8537

bd410

(bd410) HNHc
0.8466

bd764

(bd764) NA
0.8396

263178

(HCD1) NADB_Rossmann superfamily
0.833

3953

hypothetical protein
0.8294

7919

hypothetical protein
0.8279

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 67.3105 1.66E-14 222 - 290 superfamily 263921
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 67.3105 1.66E-14 222 - 290 superfamily 263921
RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] - 132.042 1.46E-34 131 - 290 multi-dom 223613

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 436544 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0003735 GO:0005840 GO:0006412 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0003735

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

GO:0005840

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

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