24776 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24776	chr_14	LRR_RI superfamily	153438	155206	-	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450831	Thaps24776.5, Thaps24776.2, Thaps24776.3, Thaps24776.4, Thaps24776.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0295

Most Highly Correlated Transcripts

38679 UBQ superfamily 0.9074	3348 hypothetical protein 0.8983	7151 hypothetical protein 0.8974	268443 SAICAR_synt_Sc 0.896	262965 0.895	11848 hypothetical protein 0.8928
7929 hypothetical protein 0.892	31150 rpsI 0.89	1175 hypothetical protein 0.8898	23819 hypothetical protein 0.8883

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	70.0769	1.63E-13	223 - 451	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_43880	PHATR_43880	250875	282229	Not available	Cre12.g529800.t1.1	Not available	488550

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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