2481 Ion_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2481 chr_2 Ion_trans 1109066 1111555 + Ion_trans

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0447

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0007
 0.40

Most Highly Correlated Transcripts

12836

EEP superfamily
0.8897

25318

AAT_I superfamily
0.8622

23243

hypothetical protein
0.8529

262619

Spc97_Spc98
0.8455

22128

DENN
0.8426

23467

hypothetical protein
0.8392

24947

zf-DHHC
0.836

21220

KU superfamily
0.8351

25023

Sec15 superfamily
0.833

23560

hypothetical protein
0.8323

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 75.055 5.00E-16 498 - 593 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 75.055 5.00E-16 498 - 593 superfamily 260155
Ion_trans Ion transport protein; This family contains Sodium, Potassium, Calcium ion channels. This family is... - 84.6466 1.36E-18 190 - 402 multi-dom 249927

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 167589 Not available 213957 Cre07.g329882.t1.1 AT5G37500.1 503276

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005267 GO:0006813 GO:0016020 GO:0005249 GO:0005261 GO:0006812 GO:0005216 GO:0006811 -

GO:0005267

potassium channel activity

Details: 
Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006813

potassium ion transport

Details: 
The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005249

voltage-gated potassium channel activity

Details: 
Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
GO Category: 
MF

GO:0005261

cation channel activity

Details: 
Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
GO Category: 
MF

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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