24816 (ASA) PRK05425
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24816 chr_14 (ASA) PRK05425 351048 352900 - PRK05425

Synonyms

NCBI ID Ensembl Genomes exon ID
7450869 Thaps24816.1, Thaps24816.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0175

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0086
 0.47

Most Highly Correlated Transcripts

bd1154

(bd1154) tpt
0.9366

bd463

(bd463) Aa_trans superfamily
0.919

bd258

(bd258) HU
0.9155

bd1645

(bd1645) tpt
0.9089

bd1306

(bd1306) NA
0.9076

bd1893

(bd1893) NA
0.9021

bd846

(bd846) NA
0.8951

bd208

(bd208) DUF3529
0.8951

bd1765

(bd1765) NA
0.8946

bd1380

(bd1380) ycf39
0.8938

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK05425 asparagine synthetase AsnA; Provisional cl00268 473.529 3.48E-166 110 - 428 specific 235456
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 473.529 3.48E-166 110 - 428 superfamily 260313

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44902 PHATRDRAFT_44902 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004071 GO:0005737 GO:0006529 GO:0004812 GO:0005524 GO:0006418 -

GO:0004071

aspartate-ammonia ligase activity

Details: 
Catalysis of the reaction: ATP + L-aspartate + NH3 = AMP + diphosphate + L-asparagine.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006529

asparagine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

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