24982 FG-GAP_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24982 chr_15 FG-GAP_2 304287 307006 - FG-GAP_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7441985 Thaps24982.2, Thaps24982.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0467

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0124
 0.37

Most Highly Correlated Transcripts

bd739

(bd739) NA
0.8859

bd1802

(bd1802) NA
0.8797

21732

Atx10homo_assoc superfamily
0.8529

bd740

(bd740) NA
0.8443

bd1891

(bd1891) COG3899
0.8383

bd1803

(bd1803) NA
0.81

21673

hypothetical protein
0.8044

21752

hypothetical protein
0.7986

32933

hypothetical protein
0.7942

21548

hypothetical protein
0.7937

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.0293 6.07E-11 601 - 652 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 59.0293 6.07E-11 601 - 652 superfamily 258488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0007160 GO:0008305 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0007160

cell-matrix adhesion

Details: 
The binding of a cell to the extracellular matrix via adhesion molecules.
GO Category: 
BP

GO:0008305

integrin complex

Details: 
A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
GO Category: 
CC

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