25318 AAT_I superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25318	chr_18	AAT_I superfamily	39128	45525	-	AAT_I superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450923	Thaps25318.2, Thaps25318.5, Thaps25318.3, Thaps25318.4, Thaps25318.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0153

Most Highly Correlated Transcripts

12836 EEP superfamily 0.9598	262619 Spc97_Spc98 0.9095	10753 hypothetical protein 0.9035	23457 DnaJ 0.8995	34590 nt_trans superfamily 0.8983	bd935 (bd935) TFIIS_I 0.8982
23560 hypothetical protein 0.8962	24100 hypothetical protein 0.8947	22883 hypothetical protein 0.8945	23989 Exo70 superfamily 0.8938

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAT_I superfamily		Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent...	-	149.771	3.46E-38	1351 - 1830	superfamily	267298
TTL superfamily		Tubulin-tyrosine ligase family; Tubulins and microtubules are subjected to several post-...	-	68.8843	1.48E-12	1033 - 1252	superfamily	251749

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42893	PHATRDRAFT_42893	239209	179293	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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