25440 SmcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25440	chr_18	Smc	797156	801157	+	Smc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444844	Thaps25440.3, Thaps25440.2, Thaps25440.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0469

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0107	0.36	0.0011 0.0092

Most Highly Correlated Transcripts

25067 hypothetical protein 0.8844	21861 hypothetical protein 0.8754	4157 hypothetical protein 0.8443	24235 Peptidase_C19 superfamily 0.8379	24434 hypothetical protein 0.8321	bd836 (bd836) Methyltransf_16 superfamily 0.8303
21307 hypothetical protein 0.8289	10057 hypothetical protein 0.8283	20644 hypothetical protein 0.8238	270222 0.822

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Smc		Chromosome segregation ATPases [Cell division and chromosome partitioning]	-	72.4396	5.01E-13	602 - 909	multi-dom	224117

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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