25629 PRK00007
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25629 chr_20 PRK00007 364727 367729 + PRK00007

Synonyms

NCBI ID Ensembl Genomes exon ID
7448534 Thaps25629.2, Thaps25629.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

bd1652

(bd1652) ABC_ATPase superfamily
0.9577

6610

hypothetical protein
0.9566

bd208

(bd208) DUF3529
0.9244

ThpsCp134

(rpl34) ribosomal protein L34
0.924

ThpsCp082

(rpl34) ribosomal protein L34
0.9222

bd258

(bd258) HU
0.9141

ThpsCp135

(secA) preprotein translocase subunit SecA
0.9043

ThpsCp029

(rpl1) ribosomal protein L1
0.9023

23462

hypothetical protein
0.9004

bd1380

(bd1380) ycf39
0.8997

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF-G Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of... cl17170 513.193 1.73E-177 91 - 370 specific 206673
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 513.193 1.73E-177 91 - 370 superfamily 266525
EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF)... cl02789 198.815 7.16E-60 570 - 690 specific 238715
EFG_like_IV superfamily Elongation Factor G-like domain IV. This family includes the translational elongation factor termed... - 198.815 7.16E-60 570 - 690 superfamily 243187
EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and... cl02787 140.315 3.16E-39 397 - 479 specific 239755
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 140.315 3.16E-39 397 - 479 superfamily 261449
EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation... cl02785 125.333 7.17E-34 695 - 772 specific 239683
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 125.333 7.17E-34 695 - 772 superfamily 261447
EFG_II superfamily Elongation Factor G, domain II; This domain is found in Elongation Factor G. It shares a similar... - 146.035 2.18E-41 491 - 564 superfamily 258632
EFG_II superfamily Elongation Factor G, domain II; This domain is found in Elongation Factor G. It shares a similar... - 146.035 2.18E-41 491 - 564 superfamily 258632

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11189 PHATRDRAFT_11189 195043 Not available Not available Cre02.g076250.t1.1 AT1G62750.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003746 GO:0006414 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003746

translation elongation factor activity

Details: 
Functions in chain elongation during polypeptide synthesis at the ribosome.
GO Category: 
MF

GO:0006414

translational elongation

Details: 
The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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