26082 SRP1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26082 chr_1 SRP1 2211122 2214169 - SRP1

Synonyms

NCBI ID Ensembl Genomes exon ID
7447655 Thaps26082.2, Thaps26082.1, Thaps26082.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0092

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0207
 0.30

Most Highly Correlated Transcripts

36911

Rhomboid
0.9553

bd1173

(bd1173) S_TKc
0.9518

7192

hypothetical protein
0.9506

bd765

(bd765) NA
0.9491

7484

hypothetical protein
0.9468

7236

hypothetical protein
0.9452

11130

hypothetical protein
0.9442

10180

hypothetical protein
0.9442

262708

TPR
0.9431

3882

hypothetical protein
0.943

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 70.8063 1.02E-14 308 - 427 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 70.8063 1.02E-14 308 - 427 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 70.8063 1.02E-14 308 - 427 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 70.8063 1.02E-14 308 - 427 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 70.8063 1.02E-14 308 - 427 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 70.8063 1.02E-14 308 - 427 superfamily 237987
SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] - 448.956 2.81E-152 8 - 497 multi-dom 227396

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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