260832 sigpep_I_bact
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260832 chr_1 sigpep_I_bact 848592 849775 + sigpep_I_bact

Synonyms

NCBI ID Ensembl Genomes exon ID
7453468 Thaps260832.4, Thaps260832.2, Thaps260832.3, Thaps260832.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0032

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0123
 0.31

Most Highly Correlated Transcripts

2597

hypothetical protein
0.8842

261284

Aldo_ket_red
0.877

36669

TPT
0.8703

261608

PLN02585
0.87

20405

GRX_GRXh_1_2_like
0.867

bd1857

(bd1857) DnaJ
0.86

268592

VDE superfamily
0.8569

7487

MFS_1
0.8524

bd1852

(bd1852) NA
0.8472

9087

Mito_carr
0.8429

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89... cl10465 76.8555 8.96E-18 204 - 334 specific 119398
Peptidase_S24_S26 superfamily The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase... - 76.8555 8.96E-18 204 - 334 superfamily 263975
sigpep_I_bact signal peptidase I, bacterial type; This model represents signal peptidase I from most bacteria.... - 99.6265 2.89E-25 191 - 340 multi-dom 233790

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 97694 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008236 GO:0016020 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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