261145 Lactamase_B superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261145 chr_1 Lactamase_B superfamily 2730930 2732179 + Lactamase_B superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452543 Thaps261145.1, Thaps261145.3, Thaps261145.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0141
 0.18

Most Highly Correlated Transcripts

bd1807

(bd1807) RRS1 superfamily
0.9658

32158

NOC3
0.9538

25120

U3_assoc_6 superfamily
0.9494

29018

NMD3
0.9397

29705

18S_RNA_Rcl1p
0.9388

22441

hypothetical protein
0.9374

21222

SrmB
0.9369

23336

SRP40_C superfamily
0.9328

268145

PLN00040
0.9297

24878

COG0412
0.9292

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 212.076 3.52E-66 1 - 305 superfamily 260426

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11850 PHATRDRAFT_11850 141192 186208 256732 Not available Not available 472581

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0042781 -

GO:0042781

3'-tRNA processing endoribonuclease activity

Details: 
Catalysis of the endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule.
GO Category: 
MF

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