262637 P4Hc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262637 chr_5 P4Hc 1985642 1986256 + P4Hc

Synonyms

NCBI ID Ensembl Genomes exon ID
7444896 Thaps262637.1, Thaps262637.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0148

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0067
 0.47

Most Highly Correlated Transcripts

270222

0.9109

20921

S2P-M50_like_2
0.8975

34590

nt_trans superfamily
0.885

1166

hypothetical protein
0.8847

921

hypothetical protein
0.8811

1470

hypothetical protein
0.8722

20615

hypothetical protein
0.8704

4580

FIG superfamily
0.87

23010

TDP2
0.8684

1569

Peptidase_M8 superfamily
0.8683

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
P4Hc Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen... cl17304 108.244 1.15E-29 27 - 179 specific 214780
2OG-FeII_Oxy_3 superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 108.244 1.15E-29 27 - 179 superfamily 266616

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016706 GO:0019538 -

GO:0016706

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Details: 
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
GO Category: 
MF

GO:0019538

protein metabolic process

Details: 
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
GO Category: 
BP

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