262860 NRDE superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262860	chr_6	NRDE superfamily	955089	956072	-	NRDE superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442346	Thaps262860.3, Thaps262860.4, Thaps262860.1, Thaps262860.2, Thaps262860.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0032

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0045	0.44

Most Highly Correlated Transcripts

21383 hypothetical protein 0.9323	268257 fabG 0.9246	32684 PRTases_typeI 0.9225	10898 hypothetical protein 0.9189	30701 PRK05279 0.9183	37934 GRX_PICOT_like 0.9163
6481 hypothetical protein 0.9139	4064 NADB_Rossmann superfamily 0.9133	36879 BolA 0.9085	10948 hypothetical protein 0.9059

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NRDE superfamily		NRDE protein; In eukaryotes this family is predicted to play a role in protein secretion and Golgi...	-	204.538	1.00E-64	1 - 239	superfamily	260880

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre12.g548550.t1.1	AT4G38260.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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